Cloning that flows
Restriction, Gibson, and Golden Gate assembly with primer design, restriction-site detection, and one-click reverse complement. Every operation lands as a new document with full provenance.
Cloning and sequence annotation, redesigned.
Design, annotate, and analyze DNA
in one browser-native workspace.
New users admitted every Friday. No credit card required.
pBR322Length: 4,361 bp
Why deoxy
Built to get out of your way.
Life doesn't fit into folders
Proteins play roles in multiple pathways. Plasmids don't belong to a single project. Labels let your work live in more than one place.
Annotations that grow with your sequences
Track genes, primers, and mutation sites across all your documents.
Always current. Always backed up.
No installs. No migrations. No nonsense. Sign in from any browser; your work is right where you left it.
Bring your files. All of them.
Import GenBank, FASTA, SnapGene, AB1 traces, and Newick trees, or pull accessions straight from NCBI. Sequences, alignments, and trees don’t count against your storage capacity.
Sharing without the friction
Share read-only document links with collaborators, students, or reviewers. No account required to view.
For teams
NewYour lab’s work, in one place.
Bring your team’s sequences, alignments, and notes together in a shared workspace. Everyone can access and edit documents, with shared labels to keep work organized.
Join the waitlist- Add team members for free, with optional Pro seats.
- Pro seats share analysis credits and NGS storage.
- Admins manage invites and membership.
Analysis
Alignment and phylogeny, built in.
Pairwise alignment, MSA, distance matrices, and phylogenetic trees, all in the same workspace. No file shuffling. No separate apps.
Primate CYTBTips: 14
Pairwise & MSA
Align two sequences or two hundred. DNA or protein.
Phylogenetic trees
Build trees from your alignments or import Newick from anywhere.
Restriction analysis
Restriction-site mapping on every sequence, with enzyme filtering.
Structure prediction
Protein structure preview via ESMFold and AlphaFold.
SRA read mapping
Map an SRA accession to a reference and view coverage. Variant calling and consensus use Professional credits.
Distance matrices
Quantify similarity at a glance. View and export to CSV.
Scale
From plasmids to chromosomes.
Large plasmids, BACs, viral genomes, and complete chromosomes, all laid out in a linear map. deoxy loads only the region you're viewing, so even genome-scale sequences remain fast and navigable.
- Navigate genome-scale sequences in real time.
- Annotations resolve as you zoom, from the full span down to single base pairs.
- Jump to a position, search, or select a region and open it as its own document.
Drosophila melanogaster chromosome XLength: 23.5 Mb
NGS
ProfessionalExplore NGS data at every scale.
Move seamlessly from chromosome-wide coverage to individual reads and called variants. deoxy keeps large sequencing datasets responsive as you zoom, so you can inspect depth, alignments, pileups, and variant evidence without losing genomic context.
NA12878_chr1_50MbContig chr1 · 249.0 Mb
Compare
How deoxy stacks up.
| Sequence design & analysis | BenchlingR&D platform / lab notebook | GeneiousSequence analysis suite | SnapGeneCloning & plasmid editor | |
|---|---|---|---|---|
| Self-serve signup (no sales call) | ✓ | – | ✓ | ✓ |
| Setup in minutes (no onboarding) | ✓ | – | Partial | ✓ |
| Phylogenetic trees built in | ✓ | – | ✓ | – |
| Protein structure prediction | ✓ | – | – | – |
| Browser-based | ✓ | ✓ | – | – |
| Cloud sync + share links | ✓ | ✓ | – | Partial |
| Shared workspaces | ✓ | ✓ | – | – |
| Free plan | ✓ | Limited | None | None |
| Paid plans | $99/yr | Enterprise only | $200/yr (students) | ~$200/yr |
Competitor pricing changes; rechecked quarterly.
Who it’s for
One tool, every bench.
For academic labs
The tools your lab needs, without procurement delays or budget approval hurdles. Create an account and start working today.
For students
Build, annotate, and analyze sequences without paywalls, licensing, or student verification hoops. The free tier includes all the tools you need to get started.
For instructors
Get students working immediately. No software installs. No license management. Teach cloning and sequence analysis using the same workflows found in modern labs.
Pricing
Priced for people, not procurement.
Personal
For everyday sequence design and analysis
$0/ year
- Cloning, alignments, trees, and more
- SRA mapping & coverage
- 50 MB genome uploads
Professional
For NGS data and advanced analyses
$99/ year
- Everything in Personal
- NGS visualization & analysis
- 100 analysis credits* / year
- 5 GB NGS & genome uploads
- 50 GB NGS storage
*Credits are used for specialized, AI-powered, or variable-cost analyses. Add more anytime.
Join the waitlistEnterprise
For institutional requirements
Customcoming soon
- Everything in Professional
- Bring-your-own-bucket (BYOB)
- SSO & audit log on the roadmap
deoxy is in founding-user early access. Personal and Professional users are being admitted from the waitlist in small batches each week so feedback can directly shape the product. Enterprise will launch as deoxy's collaboration and administration features mature.
Build in public
Shipped in the open.
deoxy is built by a solo developer with a public changelog and roadmap. Founding users get a direct line to the developer and early access to new features.
- Oct 25, 2026For teams
Shared workspaces
Collaborative workspaces are now available, with their own members, documents, and labels. Free members are included, with optional Professional seats.
- Sep 1, 2026NGS
Local NGS import
Import BAM/BAI or FASTQ on Professional, including paired-end reads. Align to a reference and view coverage, variants, and consensus.
- Aug 31, 2026Pricing
Professional plan
The Professional plan is now available: 50 GB NGS storage, 5 GB NGS and genome uploads, local BAM import, and 100 analysis credits per year for heavy SRA and variant analyses.
On the roadmap
What’s next.
A peek at what’s designed or already in early build. Founding users help shape what ships next.
VCF variant export
Export called variants as VCF for VEP, snpEff, bcftools, IGV, and other downstream tools.
Benchling export
Round-trip your data back out, not just in.
ORF detection
Scan all six reading frames for open reading frames, with inline highlighting and automatic coding-region annotations.
FAQ
Questions, answered.
How is deoxy different?
Browser-native, fast, and focused. A free tier built for actual solo work, not a 14-day teaser. Shareable documents in the cloud, without a desktop install or enterprise sales cycle. Priced for everyone: no school ID, no procurement, no per-seat minimums.
Is my data safe?
Your data is encrypted in transit and at rest. Additional security and deployment options, including self-hosting and BYOB, are planned for Enterprise.
How is deoxy different from Benchling?
deoxy is focused on making DNA design and sequence analysis fast and intuitive, without the added complexity that comes with broader R&D systems like Benchling.
What is the learning curve like?
deoxy is designed to be easy to pick up for anyone who has used tools like Benchling or SnapGene. The interface is built around familiar molecular-biology concepts, and because it runs in the browser, there’s nothing to install or update.
Is NGS included on the free plan?
Personal includes SRA accession mapping and coverage. Variant calling, consensus, SRA BLAST, extension, primer-vs-SRA, and local BAM import are Professional and use annual credits. See the NGS section
Can I migrate from Benchling / Geneious / SnapGene?
deoxy imports GenBank, FASTA, EMBL, SnapGene .dna, AB1 chromatograms, and Newick (trees). Benchling export is on the roadmap
Who's behind deoxy?
Built by a solo developer, in public.
Why is deoxy in early access, and how do I get in?
New users are admitted every Friday so feedback can directly shape the product. Join the waitlist with one click; you'll get an email when your seat is ready (typically within a couple of weeks).
Stop fighting your DNA tools.
Free for everyday sequence work. Professional plans start at $99/year for NGS and advanced analyses.