Cloning that flows
Restriction, Gibson, and Golden Gate assembly with primer design, restriction-site detection, and one-click reverse complement. Every operation lands as a new document with full provenance.
Cloning and sequence annotation, redesigned.
Design, annotate, and analyze DNA
in one browser-native workspace.
New users admitted every Friday. No credit card required.
pBR322Length: 4,361 bp
Why deoxy
Built to get out of your way.
Life doesn't fit into folders
Proteins play roles in multiple pathways. Plasmids don't belong to a single project. Labels let your work live in more than one place.
Annotations that grow with your sequences
Track genes, primers, and mutation sites across all your documents.
Always current. Always backed up.
No installs. No migrations. No nonsense. Sign in from any browser; your work is right where you left it.
Bring your files. All of them.
Import GenBank, FASTA, SnapGene .dna, AB1 traces, and Newick trees, or pull straight from NCBI by accession. Export back out anytime. No lock-in. Free up to 1 GB.
Sharing without the friction
Generate read-only document links for collaborators, students, or reviewers. No account required to view. Real-time co-editing on the roadmap
Analysis
Alignment and phylogeny, built in.
Pairwise alignment, MSA, distance matrices, and phylogenetic trees, all in the same workspace. No file shuffling. No separate apps.
Primate CYTBTips: 14
Pairwise & MSA
Align two sequences or two hundred. DNA or protein.
Phylogenetic trees
Build trees from your alignments or import Newick from anywhere.
Restriction analysis
Restriction-site mapping on every sequence, with enzyme filtering.
Structure prediction
Protein structure preview via ESMFold and AlphaFold.
Read mapping
Map FASTQ from SRA accessions to a reference (via minimap2) and visualize coverage.
Distance matrices
Quantify similarity at a glance. View and export to CSV.
Scale
From plasmids to chromosomes.
Large plasmids, BACs, viral genomes, and complete chromosomes, all laid out in a linear map. deoxy loads only the region you're viewing, so even genome-scale sequences remain fast and navigable.
- Navigate genome-scale sequences in real time.
- Annotations resolve as you zoom, from the full span down to single base pairs.
- Jump to a position, search, or select a region and open it as its own document.
Drosophila melanogaster chromosome XLength: 23.5 Mb
Compare
How deoxy stacks up.
| Sequence design & analysis | BenchlingR&D platform / lab notebook | GeneiousSequence analysis suite | SnapGeneCloning & plasmid editor | |
|---|---|---|---|---|
| Self-serve signup (no sales call) | ✓ | – | ✓ | ✓ |
| Setup in minutes (no onboarding) | ✓ | – | Partial | ✓ |
| Phylogenetic trees built in | ✓ | – | ✓ | – |
| Protein structure prediction | ✓ | – | – | – |
| Browser-based | ✓ | ✓ | – | – |
| Cloud sync + share links | ✓ | ✓ | – | Partial |
| Real-time co-editing | Roadmap | ✓ | – | – |
| Personal plan | Free (1 GB) | Limited | None | None |
| Paid plans | $99/yr (coming soon) | Enterprise only | $200/yr (students) | ~$200/yr |
Competitor pricing changes; rechecked quarterly.
For teams
Built for the lab that can’t afford Benchling Enterprise.
If you’re 5 to 30 scientists shipping fast, deoxy gives you the cloning, annotation, and shared-project workflow you need, all without a $50K/year enterprise contract or a 6-month onboarding process. Per-seat pricing that scales with your team, not against it.
Join the waitlistTeam plans launch alongside paid tiers. Waitlisted teams get first access and founding-team pricing when they go live.
- Per-seat billing, no annual minimum
- Shared projects with version snapshots
- Real-time co-editing, SSO, and audit log on the roadmap
- Direct line to the founder for feature requests
Who it’s for
One tool, every bench.
For academic labs
The tools your lab needs, without procurement delays or budget approval hurdles. Create an account and start working today.
For students
Build, annotate, and analyze sequences without paywalls, licensing, or student verification hoops. The free tier includes all the tools you need to get started.
For instructors
Get students working immediately. No software installs. No license management. Teach cloning and sequence analysis using the same workflows found in modern labs.
Pricing
Priced for people, not procurement.
Personal
For students, hobbyists, and everyday cloning
$0available now
- 1 GB storage
- 50 MB file uploads
- Unlimited projects
- Full annotation & editor
- Community support
Professional
For power users and individual scientists
$99/yr · coming soon
- Everything in Personal
- More storage
- Larger file uploads
- Priority email support
Enterprise
For labs and institutions
Customcoming soon
- Everything in Professional
- Collaboration & shared projects
- Bring-your-own-bucket (BYOB)
- SSO & audit log on the roadmap
deoxy is in founding-user early access. The Personal tier is the one being admitted to now; a small batch from the waitlist each week so feedback can directly shape the product. Professional and Enterprise will activate as the underlying features mature. Founding users lock in founding-user pricing.
SRA read mapping is in beta on every tier today; full NGS file support is on the roadmap
Build in public
Shipped in the open.
deoxy is built by a solo developer with a public changelog and roadmap. Founding users get a direct line to the developer and early access to new features.
- May 20, 2026Performance
Always-on cloud read mapping
SRA BAM mapping jobs now start immediately and run in parallel across dedicated workers, with shared reference caching for repeat jobs.
- May 19, 2026Cloning
Cloning workflows
Restriction, Gibson, Golden Gate assembly, and codon optimization workflows are now available. Each operation creates a new document with full provenance tracking.
- May 14, 2026Genome
Embedded genome map in the editor
The editor now includes a linear genome map view at low zoom levels, using the same annotation renderer as the standalone genome tab.
On the roadmap
What’s next.
A peek at what’s designed or already in early build. Founding users help shape what ships next.
CRISPR guide design
Find and score CRISPR guide RNAs against your sequence.
Professional tier
More storage, larger file uploads, and priority support for individual power users.
Real-time co-editing
Collaborative editing for shared documents.
FAQ
Questions, answered.
How is deoxy different?
Browser-native, fast, and focused. A free tier built for actual solo work, not a 14-day teaser. Shareable cloud projects without a desktop install or enterprise sales cycle. Priced for everyone: no school ID, no procurement, no per-seat minimums.
Is my data safe?
Your data is encrypted in transit and at rest. Additional security and deployment options, including self-hosting and BYOB, are planned for Enterprise.
When will NGS / BAM / FASTQ support land?
Today, deoxy can map FASTQ from SRA accessions to a reference (FASTQ BAM via minimap2) and visualize the result. Full BAM, CRAM, and FASTQ file import are on the roadmap
Can I migrate from Benchling / Geneious / SnapGene?
deoxy imports GenBank, FASTA, EMBL, SnapGene .dna, AB1 chromatograms, and Newick (trees). Benchling export is on the roadmap
Who's behind deoxy?
Built by a solo developer, in public.
Why is deoxy in early access, and how do I get in?
New users are admitted every Friday so feedback can directly shape the product. Join the waitlist with one click; you'll get an email when your seat is ready (typically within a couple of weeks). Founding users lock in founding-user pricing.
Stop fighting your DNA tools.
Free up to 1 GB. Paid plans starting at $99/year coming soon.