Roadmap
What’s being built.
deoxy is built in the open by a solo developer. This roadmap reflects current priorities: what's available today, what's coming next, and what the future holds.
Live
Available today.
Browser-native editor
Cloning, feature annotation, translations, and restriction-site analysis. All in the browser, no install.
Alignment & phylogeny
Pairwise, MSA, distance matrices, and tree-building in the same workspace as your sequences.
Structure preview
Protein structure prediction and viewing via ESMFold and AlphaFold.
Broad import support
GenBank, FASTA, EMBL, SnapGene .dna, AB1 chromatograms, and Newick trees.
Shareable document links
Read-only links for collaborators, students, and reviewers. No account required to view.
SRA read mapping (beta)
Map FASTQ from SRA accessions to a reference (FASTQ BAM via minimap2) and visualize coverage.
Mbp-scale genome streaming
Large genomes stream by viewport, so multi-GB sequences can be explored without loading the full file into memory.
Next
In active development.
CRISPR guide design
Find and score CRISPR guide RNAs against your sequence.
Professional tier
More storage, larger file uploads, and priority support for individual power users.
Real-time co-editing
Collaborative editing for shared documents.
Full NGS file upload
BAM / CRAM / FASTQ upload with multi-GB resumable transfer and large-file region editing (Pro).
Benchling export
Round-trip your data back out, not just in.
ORF detection
Scan all six reading frames for open reading frames, with inline highlighting and automatic coding-region annotations.
VCF variant export
Export called variants as VCF for VEP, snpEff, bcftools, and IGV, not just CSV.
Version history: preview & revert
Step back through document history, preview any past state, and restore it with one click.
Future
Planned, but not yet in development.
Teams & Enterprise
Planned support for shared documents, SSO, and audit logs.
Bring-your-own-bucket
Planned support for storing files in customer-owned cloud storage.
Region-based BAM/CRAM streaming
Windowed, on-demand access to multi-GB aligned-read files, extending viewport streaming from genomes to NGS tracks.
Classroom workspaces
Pre-built assignment templates for cloning, primer, and CRISPR design.
Primer-BLAST & primer upgrades
Target-specific PCR primer design, mismatch-tolerant binding search, and dimer / hairpin checks.
Expanded structure toolbox
Load experimental structures (PDB / mmCIF or RCSB fetch), render surfaces, and measure distances and angles.
RNA-seq & de novo assembly
Splice-aware RNA-seq alignment (STAR) and de novo assembly, building on the cloud mapping pipeline.
Want something moved up? Founding users have a direct line to the developer and can help shape what ships next.