Roadmap
What’s being built.
deoxy is built in the open by a solo developer. This roadmap reflects current priorities: what's available today, what's coming next, and what the future holds.
Live
Available today
BAM/BAI & FASTQ import
Local BAM/BAI and FASTQ import on Professional. Align FASTQ reads to a reference and view them in the same NGS workspace.
Multi-GB resumable transfer
Resume interrupted NGS uploads so multi-GB BAM and FASTQ transfers do not start over.
CRISPR guide design
Find and score CRISPR guide RNAs against your sequence.
Mbp-scale genome streaming
Large genomes stream by viewport, so multi-GB sequences can be explored without loading the full file into memory.
SRA read mapping
Map an SRA accession to a reference (via minimap2). Coverage, variants, and consensus. Included on Personal.
Shareable document links
Read-only links for collaborators, students, and reviewers. No account required to view.
Broad import support
GenBank, FASTA, EMBL, SnapGene .dna, AB1 chromatograms, and Newick trees.
Structure preview
Protein structure prediction and viewing via ESMFold and AlphaFold.
Alignment & phylogeny
Pairwise, MSA, distance matrices, and tree-building in the same workspace as your sequences.
Browser-native editor
Cloning, feature annotation, translations, and restriction-site analysis. All in the browser, no install.
Next
In active development
VCF variant export
Export called variants as VCF for VEP, snpEff, bcftools, IGV, and other downstream tools.
Real-time co-editing
Collaborative editing for shared documents.
Benchling export
Round-trip your data back out, not just in.
ORF detection
Scan all six reading frames for open reading frames, with inline highlighting and automatic coding-region annotations.
Version history: preview & revert
Step back through document history, preview any past state, and restore it with one click.
Future
Planned, but not yet in development
CRAM import and navigation
Import CRAM alignments and navigate them in the editor, including large-file region views.
Teams & Enterprise
Planned support for shared documents, SSO, and audit logs.
Bring-your-own-bucket
Planned support for storing files in customer-owned cloud storage.
Classroom workspaces
Pre-built assignment templates for cloning, primer, and CRISPR design.
Primer-BLAST & primer upgrades
Target-specific PCR primer design, mismatch-tolerant binding search, and dimer / hairpin checks.
Expanded structure toolbox
Load experimental structures (PDB / mmCIF or RCSB fetch), render surfaces, and measure distances and angles.
RNA-seq & de novo assembly
Splice-aware RNA-seq alignment (STAR) and de novo assembly, building on the cloud mapping pipeline.
Want something moved up? Founding users have a direct line to the developer and can help shape what ships next.